David A. Clarke

Web Space for Space Code

Halifax, N.S.

Prof. David A. Clarke, Saint Mary's University, Halifax, NS, YYYY

E-mail address · dclarke@zeus3d.ca

I am the developer and curator of the widely used magnetohydrodynamics (MHD) computer code, ZEUS-3D. With it, I and my students performed multi-dimensional simulations of fluid phenomena such as astrophysical jets.

PDF · CV · Publications · Research Interests

ZEUS-3D

Version 3.6 of ZEUS-3D is now available for public distribution.

ZEUS-3D website for gallery, description, user/installation guides, and downloading the code (version 3.6).

AZEuS (AMR+ZEUS-3D) website for gallery and description. The code is not yet ready for distribution.

EDITOR is my source-code manager for ZEUS-3D and AZEuS. Version 2.2 and user manual available for download.

ZEUS-3D simulation showing the line-of-sight integration of the magnetic energy density in a supersonic (M=10), super-Alfvénic turbulent medium using the Consistent Method of Characteristics (CMoC) in dzeus36 on a 2563 grid.

The maiden AZEuS simulation showing the Alfvénic Mach number (colours) and magnetic field lines of a protostellar jet with eight levels of refinement. This is the first simulation to follow a magnetocentrifugally launched jet (at resolution 0.00625 AU) to observational scales (2,000 AU) where the jet takes on its familiar bow-shock led morphology.

See Ramsey & Clarke for details.

Line-of-sight integration of  ∇ · v  in a jet launched magnetocentrifugally from the left face (red ring with orange centre). The jet propagates from left to right and follows a helical path as it succumbs to higher-order modes of the Kelvin-Helmholtz instability.

Details in Ouyed, Clarke, & Pudritz.

Document Bar

Links to the PDFs of primers and manuals that I have written or contributed to are given below. For documents authored solely by me, permission is granted to use and distribute freely for non-profit and academic purposes only, provided the original authorship and affiliation are retained. Those wanting any of the LATEX files should contact me directly [dclarke@zeus3d.ca].

A primer on MHD

A quick introduction to Hannes Alfvén's masterpiece.

A primer on ZEUS-3D

For those who want a quick introduction to my research code.

A primer on Tensor Calculus

Something I prepared for my own edification.

FORTRAN77 primer

A quick start-up guide for first-time programmers in FORTRAN.

Unix primer

Exceedingly basic introduction to unix for first-time users.

DBX primer

Beginner's guide to debugging with Sun's DBX.

LATEX primer

An augmented version of David Wilkins' excellent primer.

dzeus34 user manual

User manual for ZEUS-3D, version 3.4.

dzeus35 user manual

User manual for ZEUS-3D, version 3.5.

dzeus36 user manual

User manual for ZEUS-3D, version 3.6.

edit21 user manual

User manual for EDITOR, version 2.1.

edit22 user manual

User manual for EDITOR, version 2.2.

Software Bar

Offered here is a collection of short programs and coding snippets of possible use. All are available open source, as is, and without any expressed or implied warrantee. Those interested in my research codes such as ZEUS-3D should visit my Research slide.

All codes are bundled into compressed tarballs. Once downloaded and placed in the desired directory, issue the command: tar xvzf ---.tar.gz, then follow the directions in the README file in the newly created directory.

1dplot.tar.gz

Cheap-and-cheerful self-contained library to generate publication-quality 1-D postscript plots.

fans.tar.gz

Calculate and plot MHD rarefaction profiles for a given upwind state.

mhdrmn.tar.gz

An exact evolutionary MHD Riemann solver including all switch-on/off waves.

Despite my background in algorithm development and supercomputer simulations, I remain a bit of a luddite. I'm not a blogger, I don't do Facebook, and I most certainly don't tweet. This web-page, then, represents my first and likely only foray into "social media".

To hell with the expense; give the canary a second seed!

My father (Alan Keith Clarke, 1932-2019) on justifying a small – or maybe not-so-small – extravagance.

About my family

I went to the U.S. in 1984 single, came home in 1993 with a family. My wife of 34 years (as of Oct. 2021), Jodi Asbell-Clarke, hails from North Haven, CT and is currently a senior science curriculum developer at a non-profit in Cambridge MA. My son, Dane, born in Albuquerque NM in 1989, received his BIT from Carleton/Algonquin in 2011 and is a graphic artist (check out his webpage!) while my daughter, Alison, born in Urbana IL in 1992, completed her political science degree from the University of Guelph in 2014. Both live in Halifax.

Both of my parents have passed. I have two brothers; Peter Clarke lives in the Toronto area with his wife Mayr, and Gordon Macdonald lives on Vancouver Island with his wife Nicky. My step-mother, Adaline O'Gorman, lives in Victoria.

Figure out who you are, then do it on purpose.

Dolly Parton.

About my students

I am pleased to say that every student who finished their degree with me moved on successfully to the next logical stage of their academic career. Past and present students and PDFs: Where are they now?

Teaching philosophy

I believe one gets what one works for, and those who worked hard in my class will learned a lot.

Undergraduate research mini-symposia

Links to the programmes (PDF files) for the department's annual summer student mini-symposium that I've organised over the years.

2009
2010
2011
2012
2013
2016
2017
2018
2019
2020
2021
All the world's daft, save thee and me.
And lately I've been wondering about thee.

My Nana's paraphrasing of Robert Owen's (1771-1858) utterance in 1828 on severing business relations with his partner William Allen: All the world is queer save thee and me, and even thou art a little queer.

More · Quotable Quotes
The most incomprehensible thing about the Universe is that it is comprehensible.

Albert Einstein (1879-1955).

If, in the last few years, you haven't discarded a major opinion or acquired a new one, check your pulse. You may be dead.

American poet Gelett Burgess (1866-1951).

We have to learn again that science without contact with experiments is an enterprise which is likely to go completely astray into imaginary conjecture.

Hannes Alfvén (1908-1995), the father of Magnetohydrodynamics.

You don't really understand something until you can compute it.

Computational astrophysicist Michael L. Norman, on numerous occasions.

Brag of your country. When I am abroad, I brag of everything that Nova Scotia is, has, or can produce and, if they beat me at everything else, I say: `How high do your tides rise?'.

Joseph Howe (1804-1873); journalist, politician, poet, referring to the 16 m tides in the Bay of Fundy. It is because of his success at defending himself against a charge of seditious libel in 1835 that Canada has a free press.

Numquam ponenda est pluralitas sine necessitate; Plurality must never be posited without necessity.

William of Ockham (1287-1347), though versions of "Occam's Razor" can be traced to Ptolomy (90-168 AD): We consider it a good principle to explain the phenomenon by the simplest hypothesis possible. Modern versions include: The simplest explanation is usually the best.

If I have seen further than others, it is by standing upon the shoulders of giants.

Sir Isaac Newton (1642-1727).

I do not know what I may appear to the world, but to myself I seem to have been only like a boy playing on the sea-shore, and diverting myself in now and then finding a smoother pebble or a prettier shell than ordinary, whilst the great ocean of truth lay all undiscovered before me.

attributed to Sir Isaac Newton shortly before his death in 1727.

He must be a dull man who can examine the exquisite structure of a comb, so beautifully adapted to its end, without enthusiastic admiration.

Charles Darwin (1809-1882) in his On the Origin of Species, when introducing the role of instinct in the construction of "humble-bee" hives.

Prediction is very difficult, especially about the future.

Niels Bohr (1885-1962), often (but incorrectly) attributed to Yogi Berra.

Those who are not shocked when they first come across quantum theory cannot possibly have understood it.

Niels Bohr.

I cannot seriously believe in quantum theory because it cannot be reconciled with the idea that physics should represent a reality in time and space, free from spooky actions at a distance.

Albert Einstein, 1948, on his favourite critique of quantum mechanics where, so the theory requires, a measurement at location B can instantaneously have an influence at location A. On this he had stated the year before: My instinct for physics bristles at this, and in 1935 he wrote: No reasonable definition of reality could be expected to permit this. To Niels Bohr's quotation, Albert Einstein was certainly shocked!

I have stated previously that the arrow of time should follow the arrow of universal expansion, and if the universe should start to collapse, we'd all start getting younger. I was wrong.

Stephen Hawking (1942-2018) in an address to the XIII Texas Symposium on Relativistic Astrophysics, Chicago, 1986.

Only two things are infinite: the universe and human stupidity, and I'm not sure about the former.

Albert Einstein.

I haven't an inkling, and it takes a thousand inklings to make a clue!

Origin unknown. While it appears in the 1997 novel Larry's Party by Carol Shields, it was my father's response to unanswerable questions since long before then.

Freedom has to be armed no worse than tyranny.

Ukrainian President Volodymyr Zelenskyy.

And I find it kinda funny, I find it kinda sad; the dreams in which I'm dying are the best I've ever had; I find it hard to tell you, 'cause I find it hard to take; when people run in circles, it's a very very mad world, mad world.

from Mad World by Roland Orzabal and Curt Smith, Tears for Fears (1982); covered in 2001 by Michael Andrews and Gary Jules for the soundtrack of Donnie Darko.

Minimize · Quotable Quotes

Last updated by dAC, May 2024.

Copyright © 2024 David A. Clarke · Terms of Access